species:   Rhsol
pid:       PID0468
parent:    Rhi-milR-78
paralog:   
locus:     KB317705.1:400478-400547
matures:   ['GGAGAACAUUAACAGAGGGA', 'CCUCUGUUAACUGGGCUUCCGC']
srr:       SRR1994871
genome:    /Users/jax/+Genomes/Fungal_genomes/Rhsol.AFRT00000000.1_scaffolds.fa
alignment: /media/data/njohnson/+SeqLibraries/FunHP_libraries/Lin2016-hq.SRR1994871.cram
call:      samtools view /media/data/njohnson/+SeqLibraries/FunHP_libraries/Lin2016-hq.SRR1994871.cram KB317705.1:400478-400547

0 out of bounds
3 alignments
2 proper strand
2 stranded perfect matches

    ******************************** *****************************    
UCUUUCGCGACUUCCUCUGUUAACUGGGCUUCCGCGCCUCGGAGAACAUUAACAGAGGGAGAGCAAGUAG
......((..(((((((((((((.((..((.(((.....)))))..))))))))))))))).))......
----------------------------------------GGAGAACAUUAACAGAGGGA---------- l=20 a=0 c
-------------CCUCUGUUAACUGGGCUUCCGC----------------------------------- l=22 a=0 c*
---------------------------------------CGGAGAACAUUAACAGAGGGAGAGCAA---- l=27 a=1 ma
------GCGACUUCCUCUGUUAACUGGGCUUCCGCG---------------------------------- l=30 a=0 ma*

----------------------------------------GGAGAACAUUAACAGAGGG----------- l=19 a=1 
---------------------------------------CGGAGAACAUUAACAGAGGGAGAGCAA---- l=27 a=1 (ma)

mb-01011
ax-1001001
ku-01
ss-100010101100
fn-001
